Best Payroll Software for One Employee in 2026

11 min read

Introduction

Running payroll for a single employee still requires accurate tax calculations, timely payments, and year-end filings. Even very small businesses must withhold taxes, submit quarterly reports, and stay compliant with state and federal rules. Payroll software automates these steps, reduces errors, and saves hours each month—without requiring an HR background. Below, we compare the best payroll tools for one-employee businesses and outline key features, pricing, and who each platform is best for.


Gusto Solo

Best all-in-one payroll software for businesses with one employee

Overview

Gusto is the best all-in-one payroll platform for businesses with a single employee, thanks to its automated tax filing, benefits options, and simple pricing. Everything—from S corp compliance to direct deposit to year-end forms—is included in a single intuitive platform designed for non-experts. Gusto removes the complexity of payroll compliance, making it easy for solopreneurs, first-time employers, and very small teams to run accurate payroll without needing additional tools or training.

Key Features

  • Full-service payroll with federal, state, and local tax filing

  • Automated W-2 and 1099s

  • Direct deposit and digital pay stubs

  • Hiring and onboarding checklists for expanding teams

  • Integrations with major accounting platforms (QuickBooks, Xero, FreshBooks)

  • Contractors payments and 1099 filing

  • Compliance alerts and automated updates

  • Sophisticated S corp compliance tools like a reasonable salary calculator, AI-powered S corp advisory, and end-to-end S corp election  

Pros and Cons

Pros

  • Fully automated payroll and tax filing

  • Designed specifically for very small teams and first-time employers

  • Transparent, predictable pricing

  • Strong HR and onboarding tools included

  • Integrates easily with popular accounting and time-tracking systems

  • Access to benefits administration, contractor payment, invoicing and bill pay

Cons

  • HR features require higher-tier plans

  • Not ideal for businesses needing extensive industry-specific customizations

  • Limited support for complex multi-state compliance on the lowest plan

Pricing

  • For solopreneurs needing payroll, S corp compliance support, and the option to pay contractors. Pricing starts at $49 + $6 per person.

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      QuickBooks Payroll

      Best for seamless integration with QuickBooks accounting and payroll

      Overview

      QuickBooks Payroll is a powerful choice for micro-businesses running payroll for a single employee while already using the QuickBooks platform. It automates tax calculations and filings, offers next- or same-day direct deposit, and provides an intuitive dashboard that fits naturally with QuickBooks Online accounting. That tight integration saves time and reduces manual reconciliation.

      Key Features

      • Full-service payroll (automated tax filing, deposits, year-end forms) 

      • Next-day or same-day direct deposit (depending on plan) 

      • Auto Payroll to schedule and approve paychecks 

      • Employee self-service via the QuickBooks Workforce app 

      • Detailed payroll reports (labor cost, tax deductions, bank transactions) 

      • Integration with QuickBooks Time for time-tracking (hourly employees) 

      • Benefits administration (401(k), workers’ comp, health) via partners 

      • People Managing People

      • Tax penalty protection (QuickBooks covers certain penalties) 

      Pros and Cons

      Pros

      • Highly integrated with QuickBooks Online accounting — simplifies bookkeeping

      • Strong automation for tax calculation, filing, and payments

      • Flexible direct deposit timing

      • Robust reporting and insights

      Cons

      • Pricing adds up per employee, which can be less predictable even for one employee (especially as business grows) 

      • Some advanced features (like full HR support) only in higher-tier plans 

      • Same-day deposit eligibility requirements and potential delays 

      • Additional state tax filing fees beyond one state, unless on the top plan 

      Pricing

      • Payroll Core: $15 /mo + $6.50 per employee/month 

      • Payroll Premium: $26.40 /mo + $10 per employee/month 

          Note: Additional “state tax filing” costs apply for more than one state on lower plans.

          Patriot Payroll

          Best budget-friendly payroll for one employee

          Overview

          Patriot Payroll is one of the most affordable full-service payroll options for businesses with a single employee. Designed specifically for micro-businesses, it offers easy setup, straightforward tax filing, and an intuitive interface that makes payroll tasks simple even for first-time employers. Its transparent pricing and low monthly cost make it especially attractive for cost-conscious business owners looking for reliable compliance tools.

          Key Features

          • Full-service payroll with automatic tax filing

          • Direct deposit and printable checks

          • Employee pay history and reports

          • Integrated time-tracking add-on

          • Electronic W-2s and 1099s

          • Self-service employee portal

          • Option for accounting integration through Patriot’s accounting software

          • Standard or enhanced HR add-ons for growing teams

          Pros and Cons

          Pros

          • One of the most affordable full-service payroll options

          • Simple setup for very small businesses

          • Helpful customer support

          • Optional HR and time-tracking add-ons

          Cons

          • Fewer integrations than competitors

          • Limited advanced HR features

          • No same-day direct deposit

          • Interface is clean but less modern than higher-priced tools

          Pricing

          • Basic Payroll: Low monthly base price + low per-employee fee

          • Full-Service Payroll: Affordable monthly base price + per-employee fee (includes tax filing)

          • Optional add-ons: time tracking, HR tools, accounting

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              Wave Payroll

              Best ultra-affordable payroll for businesses using Wave Accounting

              Overview

              Wave Payroll is an excellent option for micro-businesses running payroll for a single employee, especially if you already use Wave’s free accounting tools. Its simple interface, unlimited payroll runs, and low pricing model make it easy to stay compliant without the cost or complexity of enterprise-level software. It’s ideal for very small teams that want full-service payroll at an accessible price.

              Key Features

              • Full-service payroll with automated federal and state tax filings

              • Unlimited payroll runs each month

              • Direct deposit for employees and contractors

              • Employee self-service portal for paystubs and tax forms

              • Seamless integration with Wave Accounting

              • Year-end W-2 and 1099 support

              • Payroll expense reporting and basic analytics

              • Simple setup and clean, easy-to-navigate interface

              Pros and Cons

              Pros

              • Very cost-effective for single-employee payroll

              • Integrates directly with Wave’s free accounting suite

              • Unlimited payroll runs without added fees

              • Straightforward, beginner-friendly design

              Cons

              • Limited advanced HR or time-tracking tools

              • Fewer integrations compared to larger payroll platforms

              • Not ideal for multi-state or more complex compliance needs

              • Reporting tools are more basic than competitors

              Pricing

              • Full-Service Payroll: Monthly base price + per-employee fee

              • Self-Service Payroll (available in select states): Lower monthly base price + per-employee fee

              • Add-ons available for accounting and additional features

                  Square Payroll

                  Best for paying hourly or part-time workers alongside one employee

                  Overview

                  Square Payroll is a strong fit for micro-businesses that employ a single worker but may also rely on contractors or hourly help. It offers simple flat-rate pricing, built-in time tracking, and seamless integration with Square POS—making it especially useful for retail, food service, home services, and other shift-based businesses. Its intuitive setup and mobile-friendly tools make payroll easy even for first-time employers.

                  Key Features

                  • Full-service payroll with automatic tax filing

                  • Built-in time tracking and tip importing (via Square POS)

                  • Direct deposit and Cash App options

                  • Unlimited payroll runs

                  • Employee and contractor payments

                  • Mobile app for employers and employees

                  • Automatic year-end W-2 and 1099 generation

                  • Integration with Square POS and invoicing tools

                  Pros and Cons

                  Pros

                  • Simple, predictable pricing well-suited to very small teams

                  • Best-in-class for businesses already using Square POS

                  • Built-in time tracking simplifies hourly payroll

                  • Strong mobile tools for both employers and employees

                  Cons

                  • Limited HR and benefits tools compared to all-in-one platforms

                  • Best functionality tied to Square’s ecosystem

                  • Advanced reporting and customization are minimal

                  • Not ideal for complex multi-state compliance

                  Pricing

                  • Monthly base price + per-employee fee

                  • Contractor-only plan with per-contractor pricing

                  • Optional add-ons for time tracking and Square ecosystem tools

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                      ADP Run

                      Best for businesses that want strong compliance and long-term scalability

                      Overview

                      ADP Run is a robust payroll and HR solution built for small businesses that may start with just one employee but expect to grow. It delivers powerful compliance tools, automated tax filing, and access to HR resources that many micro-business platforms don’t offer. ADP’s long-standing reputation and extensive feature set make it a safe, scalable choice for owners who want professional-grade payroll from day one.

                      Key Features

                      • Full-service payroll with automated tax filing

                      • Direct deposit and paper check options

                      • Employee self-service access

                      • New-hire onboarding tools

                      • Compliance alerts and document management

                      • Benefits administration options

                      • HR guidance and add-on advisory services

                      • Integrations with popular accounting software

                      Pros and Cons

                      Pros

                      • Strong compliance tools for regulated or growing businesses

                      • Scales easily as you add employees

                      • Extensive HR features and optional advisory support

                      • Trusted provider with nationwide coverage

                      Cons

                      • Pricing is quote-based and can be more expensive than competitors

                      • Some features require higher-tier plans

                      • Interface can feel complex for first-time employers

                      • Fewer built-in integrations without add-ons

                      Pricing

                      • Quote-based pricing depending on business size and feature needs

                      • Tiered packages with increasing HR tools and support

                      • Add-ons for benefits administration and HR advisory services

                          Paychex Flex

                          Best for businesses needing hands-on support and flexible service options

                          Overview

                          Paychex Flex is a versatile payroll platform ideal for small businesses running payroll for a single employee but wanting the option of live support and personalized service. With strong tax compliance tools, HR features, and optional dedicated payroll specialists, Paychex offers a more guided experience than many competitors. It’s a great fit for owners who prefer expert-backed payroll rather than a purely self-service system.

                          Key Features

                          • Full-service payroll with automatic tax filing

                          • Direct deposit and paper check options

                          • Employee self-service portal

                          • Time and attendance tools

                          • HR library and compliance resources

                          • Benefits administration options

                          • Garnishment payment services

                          • Dedicated payroll specialist available with higher-tier plans

                          Pros and Cons

                          Pros

                          • Strong customer support and optional dedicated specialist

                          • Scalable for future growth beyond one employee

                          • Comprehensive HR and compliance tools

                          • Flexible service levels for different business needs

                          Cons

                          • Pricing is not transparent and requires a quote

                          • More expensive than many micro-business options

                          • Interface can feel dated compared to newer platforms

                          • Some HR tools locked behind higher-tier plans

                          Pricing

                          • Quote-based pricing depending on features and business size

                          • Multiple plan tiers with varying HR and support options

                          • Add-ons available for benefits, time tracking, and compliance services

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                              OnPay

                              Best for simple, accurate payroll with excellent customer support

                              Overview

                              OnPay is a streamlined, full-service payroll platform designed for small businesses that need accuracy, affordability, and responsive support. It works exceptionally well for companies running payroll for a single employee thanks to its flat pricing, clear interface, and robust tax-handling features. OnPay also includes light HR tools, making it a great middle-ground between budget payroll services and more comprehensive HR platforms.

                              Key Features

                              • Full-service payroll with automatic tax payments and filings

                              • Flat-rate pricing with no hidden fees

                              • Direct deposit and printable checks

                              • Employee self-service and onboarding tools

                              • PTO management and basic scheduling

                              • Benefits administration (health, dental, 401(k))

                              • Integrations with accounting software (QuickBooks, Xero, FreshBooks)

                              • Dedicated customer support from U.S.-based payroll specialists

                              Pros and Cons

                              Pros

                              • Clear, flat-rate pricing ideal for small teams

                              • Very strong customer support and onboarding help

                              • Includes basic HR tools at no extra cost

                              • Easy, intuitive interface suitable for first-time employers

                              Cons

                              • Fewer advanced HR features than all-in-one systems

                              • Not ideal for highly complex multi-state compliance

                              • Limited customization for unique payroll setups

                              • Mobile functionality is improving but not as robust as competitors

                              Pricing

                              • Flat monthly base price + per-employee fee

                              • No contract required

                              • Optional add-ons for benefits administration

                                  Compare All

                                  Product comparison table
                                  ColumnPricingFree TrialFree PlanBest Use Case

                                  Simple $49/mo + $6/user/mo; Plus $80/mo + $12/user/mo; Premium custom pricing

                                  Solopreneurs who want all-in-one payroll, tax filing, and S-corp support

                                  $45–$125/mo + per employee

                                  Not listed

                                  One-employee businesses already using QuickBooks accounting

                                  $17–$37/mo + per employee

                                  (30 days)

                                  Cost-conscious solopreneurs who want budget-friendly payroll with optional tax filing

                                  $35/month base fee + $6/employee/month

                                  Micro-businesses already using Wave's free accounting tools who want ultra-affordable payroll

                                  $35/mo + $6/employee

                                  Hourly or POS-based one-employee businesses already using Square ecosystem

                                  Custom pricing

                                  (select plans)

                                  One-employee businesses planning to scale and wanting enterprise-backed payroll with strong compliance

                                  $39/mo + $5/employee; higher tiers are custom-priced.

                                  Businesses needing hands-on support, dedicated payroll specialists, and flexible service options

                                  $49/mo + $6/employee

                                  (1 month)

                                  Single-employee businesses that want flat, predictable pricing with excellent customer support

                                  Product comparison table
                                  CompanyPricingFree Trial

                                  Simple $49/mo + $6/user/mo; Plus $80/mo + $12/user/mo; Premium custom pricing

                                  $45–$125/mo + per employee

                                  Not listed

                                  $17–$37/mo + per employee

                                  (30 days)

                                  $35/month base fee + $6/employee/month

                                  $35/mo + $6/employee

                                  Custom pricing

                                  (select plans)

                                  $39/mo + $5/employee; higher tiers are custom-priced.

                                  $49/mo + $6/employee

                                  (1 month)

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                                  FAQ

                                  How do I do payroll for one employee?

                                  To run payroll for one employee, you’ll need to collect a W-4 form, set up federal and state tax accounts, track hours or salary details, calculate withholdings, submit tax payments, and file required forms. Payroll software automates these steps by calculating taxes, generating pay stubs, submitting payments, and handling year-end filings.

                                  Do I need payroll software for one employee?

                                  Payroll software isn’t legally required, but it can save significant time and reduce compliance errors. Even with one employee, you must withhold and remit taxes, file quarterly reports, and issue W-2s. Payroll software automates these processes, making it easier for first-time or busy business owners to stay compliant.

                                  What is the best payroll service for one employee?

                                  The best payroll service depends on your needs. Gusto is the strongest all-in-one option, offering automation, HR tools, and transparent pricing. QuickBooks Payroll works well for business owners already using QuickBooks. Square Payroll is ideal for hourly or POS-based businesses, while Patriot and Wave offer budget-friendly solutions.

                                  How much does QuickBooks Payroll cost for one employee?

                                  QuickBooks Payroll charges a monthly base fee plus a per-employee cost. While prices vary by promotion or plan level, business owners typically pay a base subscription plus a small additional fee for one employee. Higher-tier plans add same-day deposit and HR features.

                                  How much does Gusto cost for one employee?

                                  Gusto charges a monthly base price plus a per-employee fee. You'll pay one flat rate for the platform and an additional amount for your single employee. Higher-tier plans include added benefits such as time tracking and advanced HR tools.

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                                  Boost engagement with Gusto’s built-in feedback & development features.

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