8 Best Contractor Payroll Software for 2026

9 min read

Introduction

Managing 1099s doesn't have to be a headache. The best contractor payroll software makes it easy to onboard, pay, and stay compliant with freelancers—whether you’re working with one contractor or a global team.

From filing 1099s to automating mult-state payments, this guide reviews top tools to help you choose the right fit for your business.


Gusto

Best all-in-one employee & contractor payroll for small business

Overview

Gusto leads the pack for small businesses that want to pay both employees and contractors in one place. The platform includes automatic tax filing, unlimited payroll runs, intuitive onboarding, and support for paying domestic and international contractors. You also get robust HR tools, benefits management, and time tracking with upgraded plans.

Gusto ranks #1 on G2's Small-Business Indexes for Contractor Payments — Implementation, Usability, and Results for Spring 2026, based on verified small business reviews of ease of setup, ease of use, and business outcomes.

Key Features

  • Contractor-only plan available

  • 1099-NEC filing included

  • Unlimited payroll runs

  • Pay by direct deposit, check, or debit card

  • New-hire reporting in all 50 states

  • Self-onboarding for contractors

  • International contractor payments in 120+ countries

  • Employee & contractor lifetime portal access

  • Seamless HR, time tracking, and benefits tools

Pros and Cons

Pros

  • Transparent pricing

  • Excellent customer service

  • Built-in tax filing & compliance

  • Includes international contractor payments

Cons

  • Faster direct deposit limited to higher plans

  • Contractor-only plan requires at least one U.S.-based contractor

Pricing

  • Contractor-only: $35/mo + $6 per contractor (billed only in months with payments)

  • Employee + Contractor (Simple): $49/month + $6/person/month

  • Plus: $80/month + $12/person/month

  • Premium: $180/month + $22/person/month

  • Free trial: yes— pay nothing until your first payroll

  • Free plan: No

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      OnPay

      Best basic contractor payroll

      Overview

      OnPay offers all-in-one payroll and HR for a flat rate. Their plan includes automated taxes, onboarding, benefits, and 1099 filings. It’s a no-frills option that works well for small teams or businesses without complex payroll needs.

      Key Features

      • Flat-rate pricing

      • Multi-state payroll

      • 1099-NEC generation and filing

      • Contractor self-service setup

      • Pay via check, deposit, or debit card

      Pros and Cons

      Pros

      • Transparent, single-tier pricing

      • Supports ITIN-only contractors

      • Includes basic HR and benefits setup

      Cons

      • Few integrations

      • Limited growth scalability

      • Extra fee for mailing tax forms

      Pricing

      • Flat rate: $40/mo + $6/person

      • Free trial: yes— 3 months free promo

      • Free plan: No

          Learn more about OnPay

          ADP

          Best for quickly growing teams

          Overview

          ADP is a household name in payroll—and offers a contractor platform called WorkMarket for hiring, onboarding, paying, and managing freelancers. It integrates with ADP Run and Workforce Now, making it ideal for businesses scaling past 50 employees.

          Key Features

          • ADP WorkMarket for contractors

          • Full-service payroll for employees

          • 1099 and W-2 filing

          • Self-service portals

          • Over 700 integrations

          Pros and Cons

          Pros

          • Extensive features for growing teams

          • Modular pricing across plans

          • Dedicated contractor management tools

          Cons

          • Complicated pricing tiers

          • Requires multiple platforms (Run + WorkMarket)

          • No out-of-the-box solution

          Pricing

          • Custom quote required

          • Reported rates start at $59/mo + $4/person (not confirmed)

          • Free trial: Yes — select products

          • Free plan: No

              Learn more about ADP

              One Platform for Happy Teams

              Hire, pay & manage effortlessly with Gusto’s all-in-one HR platform.

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              Rippling

              Best contractor payroll for tech-forward teams

              Overview

              Rippling’s all-in-one workforce platform automates HR, IT, and payroll processes. Their contractor services include international payments, hardware provisioning, and easy W-2 conversion. It’s ideal for tech-savvy businesses with complex workflows.

              Key Features

              • Payroll & HR in 150+ countries

              • 1099 onboarding and storage

              • Workflow automation

              • Customizable reports and triggers

              • Hardware/software provisioning

              Pros and Cons

              Pros

              • Supports global payments

              • Rich automation features

              • Hundreds of software integrations

              Cons

              • Minimum one-year contract

              • Not ideal for very small teams

              • Pricing can add up fast

              Pricing

              • Contractor payments: $20/worker/mo

              • EOR services: $599/employee/mo

              • Requires Unity Core platform: $35+ base + per-user fees

              • Free trial: No

              • Free plan: No

                  Learn more about Rippling

                  Square

                  Best contractor payroll for retail and restaurants

                  Overview

                  Square Payroll works seamlessly with its POS system, making it a smart choice for service businesses. It includes tip pooling, time tracking, and a low-cost contractor-only plan.

                  Key Features

                  • Syncs with Square POS

                  • Unlimited pay runs

                  • Tip reporting and splitting

                  • Built-in time tracking

                  • 1099 prep and e-filing

                  Pros and Cons

                  Pros

                  • Affordable contractor-only plan

                  • Ideal for retail and restaurants

                  • Free time tracking for small teams

                  Cons

                  • No new hire reporting for contractors

                  • Customer support can be limited

                  Pricing

                  • Employee + contractor: $35/mo + $6/person

                  • Contractor-only: $6/contractor/mo

                  • Free trial: No

                  • Free plan: No

                      Learn more about Square Payroll

                      Smarter Time Tracking

                      Save hours with Gusto’s automated payroll, PTO, and compliance tools.

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                      Deel

                      Best feature-rich payroll for international contractors

                      Overview

                      Deel is built for global teams, with tools to hire, onboard, and pay contractors in 150+ countries. It offers local compliance, payment options like PayPal and crypto, and fast onboarding.

                      Key Features

                      • Contractor payments in 150+ countries

                      • 15+ payment methods (PayPal, crypto, bank, etc.)

                      • Compliant contracts and onboarding

                      • Global HR tools included

                      • Built-in background checks

                      Pros and Cons

                      Pros

                      • Best-in-class international tools

                      • Fast contractor setup

                      • Robust payment flexibility

                      Cons

                      • Pricing not transparent

                      • Expensive for small teams

                      • Limited integrations

                      Pricing

                      • International contractor plan: $49/contractor/mo

                      • EOR services: $599/employee/mo

                      • Free trial: Account setup free; charges apply once you hire

                      • Free plan: No

                          Learn more about Deel

                          QuickBooks

                          Best value contractor-only payroll

                          Overview

                          QuickBooks Payroll is a smart choice if you're already using QuickBooks for accounting. The contractor-only plan offers next-day deposits and easy 1099 creation at a low price.

                          Key Features

                          • Contractor-only plan: up to 20 contractors

                          • 1099 generation (e-filing extra)

                          • Next-day direct deposit

                          • Syncs with QuickBooks accounting

                          Pros and Cons

                          Pros

                          • Affordable pricing

                          • Bundles with QuickBooks accounting

                          • User-friendly interface

                          Cons

                          • Local taxes and advanced tools require higher plans

                          • Doesn’t integrate with other accounting platforms

                          Pricing

                          • Contractor-only: $15/mo (up to 20 contractors)

                          • With Simple Start: $45/mo

                          • Full-service Payroll Core: $45/mo + $6/person

                          • Free trial: Yes — 30 days or 50% off 3 months

                          • Free plan: No

                              Learn more about Quickbooks

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                              SurePayroll

                              Best budget contractor payroll with DIY taxes

                              Overview

                              SurePayroll is ideal for small businesses that want bare-bones payroll at a low price. Their self-service option is the cheapest on the list but requires you to file your own taxes.

                              Key Features

                              • DIY or full-service tax filing

                              • 1099 and W-2 support

                              • Same-day and next-day deposits

                              • Limited HR tools

                              Pros and Cons

                              Pros

                              • Cheapest option for payroll basics

                              • Option to save with DIY tax filing

                              • Evening and weekend customer support

                              Cons

                              • Pricing lacks transparency

                              • Extra fees for integrations

                              • No global or advanced HR features

                              Pricing

                              • Self-service: From $19.99/mo + $4/person

                              • Full-service: From $29.99/mo + $5/person

                              • Free trial: Yes — up to 6 months free

                              • Free plan: No

                                  Learn more about SurePayroll

                                  Compare All

                                  Product comparison table
                                  ColumnPricingFree TrialFree PlanBest Use Case

                                  Simple $49/mo + $6/user/mo; Plus $80/mo + $12/user/mo; Premium custom pricing

                                  Small businesses paying both employees and contractors with built-in 1099 compliance

                                  $49/mo + $6/employee

                                  (1 month)

                                  SMBs wanting simple, no-frills contractor payroll at a predictable price

                                  Custom pricing

                                  (select plans)

                                  Quickly growing teams needing scalable contractor and employee payroll

                                  ~$8/user/mo + base fee 35-$40/month + add‑ons

                                  (varies by product)

                                  Tech-forward teams automating contractor workflows and global payments

                                  $35/mo + $6/employee

                                  Retail and restaurant businesses paying contractors through Square POS

                                  $49/contractor/mo; $599 EOR

                                  Companies paying international contractors with flexible payment methods

                                  $45–$125/mo + per employee

                                  Not listed

                                  QuickBooks users needing low-cost contractor-only payroll

                                  $19.99–$29.99/mo + per employee

                                  Not listed

                                  Budget-conscious teams handling basic contractor payroll and DIY taxes

                                  Product comparison table
                                  CompanyPricingFree Trial

                                  Simple $49/mo + $6/user/mo; Plus $80/mo + $12/user/mo; Premium custom pricing

                                  $49/mo + $6/employee

                                  (1 month)

                                  Custom pricing

                                  (select plans)

                                  ~$8/user/mo + base fee 35-$40/month + add‑ons

                                  (varies by product)

                                  $35/mo + $6/employee

                                  $49/contractor/mo; $599 EOR

                                  $45–$125/mo + per employee

                                  Not listed

                                  $19.99–$29.99/mo + per employee

                                  Not listed

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                                  FAQ

                                  Which contractor payroll software is rated highest by small businesses?

                                  Gusto ranks #1 on three G2 Small-Business Indexes for Contractor Payments — Implementation, Usability, and Results in the Spring 2026 reports. These rankings are based on verified user reviews measuring setup speed, ease of use, and business outcomes among small businesses.

                                  How do I know if a worker is a contractor or employee?

                                  The IRS looks at control: if you dictate how, when, and where work is done, they may be an employee. Independent contractors set their own hours, use their own tools, and serve multiple clients.

                                  What’s the difference between 1099 and W-2 workers?

                                  W-2 employees have taxes withheld from paychecks and receive benefits. 1099 contractors handle their own taxes and typically aren’t eligible for benefits.

                                  How do payroll services for contractors work?

                                  Contractor payroll software lets you onboard freelancers, collect tax forms (like W-9s), run payments, and generate 1099s. Many also offer self-service portals and automation for recurring payments.

                                  How do I pay international contractors?

                                  Some platforms like Deel and Gusto allow you to pay contractors overseas using services like Wise, PayPal, or direct bank transfers—often with built-in tax and compliance tools.

                                  Empower Growth & Performance

                                  Boost engagement with Gusto’s built-in feedback & development features.

                                  How It Works